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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28230142_28246911_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28230142 - 28246911

Intron Length:

16770

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATATTC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTCTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

TCCCTTCCAACC

Flanking Amino Acid:

KLNSSSVRNSEKVHSCDQER

Intron Amino Acid Position:

233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

77.9

Major BPS

75.1

0.62

65.6

Major PPT

81.2

0.7

0.8

73.5

37.1

Minor 5ss

42.6

-0.8

3.1

59.6

Minor BPS

44.2

-0.4

1.8

51.85

39.6

Associated Gene:

Gene:

SMOC1

Ensembl Gene ID:

ENSAPLG00000014966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033009

28149694 - 28267855

118162

ENSAPLT00000015613

28149694 - 28269750

120057