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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28247105_28247939_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28247105 - 28247939

Intron Length:

835

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGAGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTTCTTTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATCAC

U12 Branch Point Sequence:

TATCACATAGTT

Flanking Amino Acid:

TGRPLPGTSTRYETPVCESD

Intron Amino Acid Position:

297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

72.9

36.6

Major BPS

69.5

0.49

71.8

33.3

Major PPT

0.97

0.6

91.8

19.1

Minor 5ss

33.6

-1.9

3.5

49.7

46.1

Minor BPS

46.9

-0.1

69.31

Associated Gene:

Gene:

SMOC1

Ensembl Gene ID:

ENSAPLG00000014966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033009

28149694 - 28267855

118162

ENSAPLT00000015613

28149694 - 28269750

120057