Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28248023_28252361_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28248023 - 28252361

Intron Length:

4339

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTGAG

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTGAA

U12 Branch Point Sequence:

TTGCATTGAACC

Flanking Amino Acid:

DDPFKDRELPGCPEGKKVEF

Intron Amino Acid Position:

325

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

1.1

73.5

37.5

Major BPS

67.1

0.42

37.9

Major PPT

89.5

0.89

0.6

84.3

23.7

Minor 5ss

28.4

-2.5

2.9

31.8

42.6

Minor BPS

53.5

0.09

1.6

65.89

39.3

Associated Gene:

Gene:

SMOC1

Ensembl Gene ID:

ENSAPLG00000014966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033009

28149694 - 28267855

118162

ENSAPLT00000015613

28149694 - 28269750

120057