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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28252468_28261809_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28252468 - 28261809

Intron Length:

9342

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTCCG

5'SS Class:

strong_major

3'SS Sequence:

TCCTCCCTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAG

U12 Branch Point Sequence:

CACTTGTCAGGG

Flanking Amino Acid:

INSAAPTGGGRFSEPDPSHT

Intron Amino Acid Position:

360

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

71.4

40.3

Major BPS

60.9

0.27

1.7

71.4

45.1

Major PPT

81.7

0.71

0.7

72.9

Minor 5ss

29.1

-2.4

2.7

41.9

Minor BPS

32.8

-1.4

2.2

31.44

41.4

Associated Gene:

Gene:

SMOC1

Ensembl Gene ID:

ENSAPLG00000014966

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033009

28149694 - 28267855

118162

ENSAPLT00000015613

28149694 - 28269750

120057