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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28267755_28269733_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28267755 - 28269733
Intron Length:
1979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CCACCCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
GTTTGCCCACCC
Flanking Amino Acid:
SGKRQGLNPFIGRLV*
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
69.8
0.45
0.8
60.6
34.9
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
42.2
-0.6
2.4
60.3
44.6

Associated Gene:

Gene:
SMOC1
Ensembl Gene ID:
ENSAPLG00000014966
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015613
28149694 - 28269750
120057