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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2827540_2829034_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2827540 - 2829034
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
SLRQQKLDRQRALLEQKQKK
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.2
1.04
0.7
90.6
21.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
83.8
0.76
0.7
82.1
29.1
Minor 5ss
43.9
-0.7
3.2
64.8
46.5
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
TUB
Ensembl Gene ID:
ENSAPLG00000013637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038284
2794936 - 2914004
119069
ENSAPLT00000035884
2795193 - 2860153
64961
ENSAPLT00000017248
2795193 - 2908014
112822
ENSAPLT00000014251
2794936 - 2914004
119069
ENSAPLT00000038374
2794936 - 2914004
119069