Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28283935_28284406_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28283935 - 28284406

Intron Length:

472

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

ATTCCCACAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

ATTCCCACAACA

Flanking Amino Acid:

VIIEESYEFKSTVDKLIKKT

Intron Amino Acid Position:

666

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

1.2

76.2

39.9

Major BPS

83.9

0.84

73.9

41.3

Major PPT

66.5

0.37

0.9

60.3

34.6

Minor 5ss

29.8

-2.3

3.1

41.5

44.9

Minor BPS

57.1

0.22

1.8

73.38

37.5

Associated Gene:

Gene:

SLC8A3

Ensembl Gene ID:

ENSAPLG00000015553

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021336

28282453 - 28385902

103450

ENSAPLT00000016237

28282453 - 28385902

103450