About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28284532_28297992_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28284532 - 28297992
Intron Length:
13461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAGTAC
5'SS Class:
major
3'SS Sequence:
CTTGCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TTAGTGTTGACC
Flanking Amino Acid:
PRMVDMSLQKEVAERKLTVE
Intron Amino Acid Position:
625

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1
61.2
33.6
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
85.6
0.8
0.8
80.2
31.8
Minor 5ss
37
-1.5
3.3
48.7
47.8
Minor BPS
49.2
-0
2.2
65.48
40.8

Associated Gene:

Gene:
SLC8A3
Ensembl Gene ID:
ENSAPLG00000015553
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021336
28282453 - 28385902
103450