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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_2829087_2860118_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2829087 - 2860118
Intron Length:
31032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTGTTCTAATT
Flanking Amino Acid:
HVDPLERLCTNVLDDEGSSL
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.2
0.75
0.9
77.1
37.1
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
58.7
0.35
1.7
79.49
37.4

Associated Gene:

Gene:
TUB
Ensembl Gene ID:
ENSAPLG00000013637
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035884
2795193 - 2860153
64961