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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28297002_28365728_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28297002 - 28365728
Intron Length:
68727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
GTTGTCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTACAC
U12 Branch Point Sequence:
TTGTCCCTACAG
Flanking Amino Acid:
GELEFKNDETVKTVRVKIVD
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1.1
71.8
38.2
Major BPS
57.7
0.19
1.2
66.7
40
Major PPT
77.4
0.62
0.9
69.7
36.8
Minor 5ss
39
-1.2
2.7
48.2
40.4
Minor BPS
48.5
-0.2
2.1
61.37
46

Associated Gene:

Gene:
SLC8A3
Ensembl Gene ID:
ENSAPLG00000015553
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016237
28282453 - 28385902
103450