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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28454793_28547506_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28454793 - 28547506
Intron Length:
92714

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTAGTCCTAACT
Flanking Amino Acid:
YDVSLKIQRRLYLVGGSFGL
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
76.7
34.9
Major BPS
100
1.24
0.5
100
0
Major PPT
85.2
0.79
0.9
76.9
42.1
Minor 5ss
49.4
-0
2.4
57.9
46.7
Minor BPS
62.2
0.46
1.8
81.18
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015990
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021391
28451879 - 28553501
101623