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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28486767_28519367_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28486767 - 28519367
Intron Length:
32601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTACTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTTCTTACTG
Flanking Amino Acid:
EPVILNVYDMYWINEYTSTL
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
82.6
0.73
0.7
78.7
28.5
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
68.5
0.44
1.6
74.4
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015803
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016473
28469310 - 28519882
50573