About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28565173_28565963_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28565173 - 28565963
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATGC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
TCTTTCTCCACA
Flanking Amino Acid:
RQKFPPKFVQQKPGEKPIPV
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
68.6
37.4
Major BPS
71.2
0.53
1
61
37.5
Major PPT
84.8
0.78
0.7
80
25.5
Minor 5ss
44.4
-0.6
2.8
59.5
45.2
Minor BPS
55.1
0.15
2
70.77
41.8

Associated Gene:

Gene:
MED6
Ensembl Gene ID:
ENSAPLG00000016074
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016769
28564395 - 28575348
10954