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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28567470_28570004_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28567470 - 28570004
Intron Length:
2535

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TGATCCTGCATA
Flanking Amino Acid:
RKQQRQSPTQVIPLADYYII
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
73.1
38.8
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
82.4
0.73
0.7
76.9
25.2
Minor 5ss
37
-1.5
3.2
47.6
48
Minor BPS
52.1
0.06
1.9
66.1
40.2

Associated Gene:

Gene:
MED6
Ensembl Gene ID:
ENSAPLG00000016074
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016769
28564395 - 28575348
10954