About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28570097_28571129_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28570097 - 28571129
Intron Length:
1033

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTCTATTT
Flanking Amino Acid:
KMQRMTLDHLNQMVGVEYIL
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.6
0.78
0.8
81.9
34.4
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
49.2
0.02
1.9
71.43
40.6

Associated Gene:

Gene:
MED6
Ensembl Gene ID:
ENSAPLG00000016074
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016769
28564395 - 28575348
10954