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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28571303_28575309_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

28571303 - 28575309

Intron Length:

4007

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCT|GTGGATATC

5'SS Class:

weak_major

3'SS Sequence:

TACTCAGTGTAAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TACTCAG

U12 Branch Point Sequence:

GCTTTGGTACTC

Flanking Amino Acid:

YYNIIWKHSAFLFPDNLLGI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

53.6

0.09

1.1

58.9

40.1

Major BPS

63.2

0.33

1.5

71.6

36.4

Major PPT

52.5

0.06

1.2

56.8

42.5

Minor 5ss

35.7

-1.6

3.3

43.6

Minor BPS

-0.9

2.5

49.33

42.1

Associated Gene:

Gene:

MED6

Ensembl Gene ID:

ENSAPLG00000016074

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016769

28564395 - 28575348

10954