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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28655339_28658979_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28655339 - 28658979
Intron Length:
3641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTATTATTT
Flanking Amino Acid:
CHKELGAGEDGLKALVEGYK
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.7
40.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84
0.76
0.8
81.5
34.7
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
54.9
0.23
1.8
78.22
38.2

Associated Gene:

Gene:
MAP3K9
Ensembl Gene ID:
ENSAPLG00000016153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016857
28652111 - 28695160
43050