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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28661016_28663473_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28661016 - 28663473
Intron Length:
2458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
GATCTCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TCTTTCTGATCT
Flanking Amino Acid:
MFDQLRAKEKELRTWEEELT
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
70
0.45
0.9
63.2
33.9
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
61.8
0.45
1.7
80.23
41.8

Associated Gene:

Gene:
MAP3K9
Ensembl Gene ID:
ENSAPLG00000016153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016857
28652111 - 28695160
43050