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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28663650_28667083_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28663650 - 28667083
Intron Length:
3434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCTGTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
AGATGCTTAATA
Flanking Amino Acid:
CPEPFAKLMEDCWNPDPHSR
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
73.8
0.54
0.9
65.6
41
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
61.3
0.35
1.8
67.52
38.8

Associated Gene:

Gene:
MAP3K9
Ensembl Gene ID:
ENSAPLG00000016153
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016857
28652111 - 28695160
43050