Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28732202_28735057_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28732202 - 28735057

Intron Length:

2856

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTGTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACATAAT

U12 Branch Point Sequence:

TTCTACATAATT

Flanking Amino Acid:

SYAGIDPNNQVGSGFSRLGT

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

66.4

0.41

1.1

66.3

36.5

Major PPT

76.2

0.59

0.8

68.4

37.4

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

62.4

0.47

1.8

81.94

39.5

Associated Gene:

Gene:

PCNX1

Ensembl Gene ID:

ENSAPLG00000016331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037820

28718158 - 28799021

80864

ENSAPLT00000027325

28718158 - 28799021

80864

ENSAPLT00000017058

28718158 - 28799021

80864

ENSAPLT00000047442

28718158 - 28799021

80864

ENSAPLT00000041777

28718158 - 28799021

80864