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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28735104_28737825_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28735104 - 28737825
Intron Length:
2722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TATACTCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
GTATTTCTAACT
Flanking Amino Acid:
SRLGTAATIKDLATDRKLFR
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.6
33.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.1
0.43
1
63.3
37.9
Minor 5ss
32.5
-2
3.3
47.4
48
Minor BPS
61.6
0.44
1.6
77.99
38

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047442
28718158 - 28799021
80864