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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28739527_28755958_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28739527 - 28755958

Intron Length:

16432

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TGTTCTCTCGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGGTAAT

U12 Branch Point Sequence:

TTCCCGGTAATG

Flanking Amino Acid:

EGEEQESASGAFKMVSKASS

Intron Amino Acid Position:

769

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

97.9

1.13

0.6

92.3

16.1

Major BPS

56.9

0.17

1.4

44.6

Major PPT

0.63

0.8

73.7

31.3

Minor 5ss

-1.7

2.7

41.8

44.8

Minor BPS

-0.5

2.6

56.08

45.8

Associated Gene:

Gene:

PCNX1

Ensembl Gene ID:

ENSAPLG00000016331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037820

28718158 - 28799021

80864