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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28751072_28765124_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28751072 - 28765124
Intron Length:
14053

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGTAT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTTCTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AGTTTTATAATA
Flanking Amino Acid:
PPTLLIGSPLSDTDSHVSSS
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.6
36.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
78
0.63
0.8
72.2
32.6
Minor 5ss
37
-1.5
3.6
54.5
49.7
Minor BPS
57.1
0.22
1.5
66.84
33.3

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000041777
28718158 - 28799021
80864