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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28765183_28767251_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28765183 - 28767251
Intron Length:
2069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GACTTTCTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTTTGTTAATC
Flanking Amino Acid:
TSVRFYPHDLLSLPQIRLNR
Intron Amino Acid Position:
833

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
0.9
83.4
29
Major BPS
84.4
0.85
1
84
34.5
Major PPT
76.3
0.59
0.8
73.8
36.6
Minor 5ss
48
-0.2
2.8
68.9
36.6
Minor BPS
63.3
0.4
2
75.93
34.7

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000041777
28718158 - 28799021
80864