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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28768685_28769243_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28768685 - 28769243
Intron Length:
559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
TTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
GAGTGGATAACT
Flanking Amino Acid:
IASCQYSLLKSVQPDSSSPR
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
64.9
0.37
1
67
29.8
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
42.7
-0.4
2.5
62.81
46.6

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864