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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28769277_28770570_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28769277 - 28770570
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTGTTTTTAAAC
Flanking Amino Acid:
VQPDSSSPRHGHNRIIAYSR
Intron Amino Acid Position:
968

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
80
34.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
76.9
0.61
1
74.1
39.5
Minor 5ss
38.3
-1.3
3.1
54.8
42.5
Minor BPS
69.6
0.59
1.3
74.76
36

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864