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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28772398_28772859_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28772398 - 28772859
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTGTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTAATCTAATT
Flanking Amino Acid:
QLDIHVFGGNATTSLLAALY
Intron Amino Acid Position:
1062

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74
36.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89
0.88
0.8
88.7
28.3
Minor 5ss
31
-2.2
3.2
37
41.8
Minor BPS
49.2
0.02
1.9
70.16
41.1

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864