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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28772952_28774054_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28772952 - 28774054

Intron Length:

1103

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTGAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTGTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCATTTTTAATT

Flanking Amino Acid:

LYGLCYGALKDSWDGQHIPV

Intron Amino Acid Position:

1093

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.01

0.7

86.6

22.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

88.2

0.86

0.8

80.5

Minor 5ss

28.9

-2.4

3.2

39.6

46.4

Minor BPS

72.8

0.79

1.1

79.64

37.1

Associated Gene:

Gene:

PCNX1

Ensembl Gene ID:

ENSAPLG00000016331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037820

28718158 - 28799021

80864

ENSAPLT00000027325

28718158 - 28799021

80864

ENSAPLT00000017058

28718158 - 28799021

80864

ENSAPLT00000047442

28718158 - 28799021

80864

ENSAPLT00000041777

28718158 - 28799021

80864