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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28778089_28778486_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28778089 - 28778486

Intron Length:

398

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTGTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

ATTTGTTCAATT

Flanking Amino Acid:

HVSTVFTVLQPILSYVLYAL

Intron Amino Acid Position:

1196

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

79.5

36.8

Major BPS

65.3

0.38

71.6

30.1

Major PPT

80.4

0.68

0.8

80.7

31.3

Minor 5ss

38.5

-1.3

3.4

55.9

48.3

Minor BPS

56.9

0.29

1.9

78.23

38.7

Associated Gene:

Gene:

PCNX1

Ensembl Gene ID:

ENSAPLG00000016331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041777

28718158 - 28799021

80864

ENSAPLT00000037820

28718158 - 28799021

80864

ENSAPLT00000027325

28718158 - 28799021

80864

ENSAPLT00000017058

28718158 - 28799021

80864

ENSAPLT00000047442

28718158 - 28799021

80864