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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28779366_28780725_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28779366 - 28780725
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
ATTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGAAT
U12 Branch Point Sequence:
ATTTCCTTCACA
Flanking Amino Acid:
NIASPKKLDTELGALMITIA
Intron Amino Acid Position:
1293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
59.4
0.24
1.5
69.7
44.2
Major PPT
82.4
0.73
0.8
76.6
31.3
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
77.1
0.85
1.7
85.87
33.2

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864