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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28781401_28781987_F

Intron Information:

Intron Rank:
21
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
28781401 - 28781987
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
CCTTATCCTACAG|A
3'SS Class:
minor_BPS
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CCTTCCTTAATC
Flanking Amino Acid:
HAFAQPFAVPHSAMLFVQAA
Intron Amino Acid Position:
1389

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
62.3
44.7
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
79.5
0.66
0.8
72.6
32
Minor 5ss
94.6
1.5
0.8
89.3
22.6
Minor BPS
79.5
0.91
1.2
77.77
38.8

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864