About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28782118_28782408_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28782118 - 28782408
Intron Length:
291

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGAA
5'SS Class:
major
3'SS Sequence:
CATTTTATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATTTTATT
Flanking Amino Acid:
RPVKFWERDYNTKRVDHSNT
Intron Amino Acid Position:
1432

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.3
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
84.2
0.77
0.8
81.7
34.2
Minor 5ss
32.3
-2
3.4
39.2
41
Minor BPS
55.3
0.25
1.8
78.34
37.7

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864