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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28783377_28783785_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28783377 - 28783785

Intron Length:

409

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTCCTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

CTTCTCTTACTT

Flanking Amino Acid:

TFQLRGLEFRGTYCQQREVE

Intron Amino Acid Position:

1524

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.7

81.3

32.8

Major BPS

96.5

1.15

0.6

34.2

Major PPT

71.7

0.49

32.9

Minor 5ss

30.9

-2.2

3.2

39.6

46.4

Minor BPS

60.9

0.42

1.6

76.4

40.9

Associated Gene:

Gene:

PCNX1

Ensembl Gene ID:

ENSAPLG00000016331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017058

28718158 - 28799021

80864

ENSAPLT00000047442

28718158 - 28799021

80864

ENSAPLT00000041777

28718158 - 28799021

80864

ENSAPLT00000037820

28718158 - 28799021

80864

ENSAPLT00000027325

28718158 - 28799021

80864