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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28784040_28784964_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28784040 - 28784964
Intron Length:
925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAATTC
5'SS Class:
major
3'SS Sequence:
ACTACTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
TATATTTTACTA
Flanking Amino Acid:
RKILTTYYVKGIIYYVTTSP
Intron Amino Acid Position:
1609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
71
33.6
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
73.6
0.53
1
69.3
41
Minor 5ss
47.9
-0.2
2.9
67.6
43.7
Minor BPS
53.7
0.11
1.6
64.26
36.6

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864