About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28785196_28786502_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28785196 - 28786502
Intron Length:
1307

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCCTTACTGGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
CCCTCCTTACTG
Flanking Amino Acid:
IEYCCSRREKPLDSSKDSPL
Intron Amino Acid Position:
1686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
69.9
0.5
1
73
31.5
Major PPT
61.5
0.26
1.1
64.1
36
Minor 5ss
38
-1.4
3.1
50.1
46.4
Minor BPS
54.2
-0
1.8
54.08
47.7

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864