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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28786604_28787429_F

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28786604 - 28787429
Intron Length:
826

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCTTCTCAACA
Flanking Amino Acid:
ALGTASHHMSSNLESFLYGL
Intron Amino Acid Position:
1719

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
80.9
0.69
0.8
77.5
29.8
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
71.3
0.66
1.5
79.1
37.4

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864