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Intron Name: Anas_platyrhynchos_platyrhynchos_5_28787581_28789564_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28787581 - 28789564

Intron Length:

1984

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAGAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGGAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CAATCAT

U12 Branch Point Sequence:

CATACTTTACCA

Flanking Amino Acid:

GIRMSLKLHQDHFTSPDEYD

Intron Amino Acid Position:

1770

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

0.8

80.3

Major BPS

68.1

0.45

1.1

69.7

35.6

Major PPT

66.2

0.37

1.1

42.6

Minor 5ss

26.7

-2.7

3.3

37.5

47.2

Minor BPS

56.6

0.2

1.7

64.85

41.7

Associated Gene:

Gene:

PCNX1

Ensembl Gene ID:

ENSAPLG00000016331

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027325

28718158 - 28799021

80864

ENSAPLT00000017058

28718158 - 28799021

80864

ENSAPLT00000047442

28718158 - 28799021

80864

ENSAPLT00000041777

28718158 - 28799021

80864

ENSAPLT00000037820

28718158 - 28799021

80864