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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28789796_28790139_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28789796 - 28790139
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
GCCTTTTTACTT
Flanking Amino Acid:
KRYLSFRVIKVNKECVRGLW
Intron Amino Acid Position:
1847

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
92
0.94
0.6
87.8
22.1
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
51.1
0.11
1.6
62.87
42.6

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864