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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28790415_28792027_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28790415 - 28792027
Intron Length:
1613

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATTATGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTTAATGTAATT
Flanking Amino Acid:
IRNFIVSTWHRLRKGCGAGC
Intron Amino Acid Position:
1938

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
80.2
30.7
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
81.1
0.7
0.9
77.5
41
Minor 5ss
34.1
-1.8
2.8
40.8
45.4
Minor BPS
47.2
-0.1
2.2
68.97
42.6

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864