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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28792270_28793287_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28792270 - 28793287
Intron Length:
1018

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACATTA
5'SS Class:
major
3'SS Sequence:
TCTTTATTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
ATCTCTTTATTT
Flanking Amino Acid:
AHPPTHPSTLGTSHSSHSVQ
Intron Amino Acid Position:
2019

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.2
68.7
39.1
Major BPS
79
0.72
1
80.3
31.7
Major PPT
86.4
0.82
0.7
85.4
28
Minor 5ss
46.6
-0.3
2.9
56.5
47.7
Minor BPS
64.9
0.55
1.6
77.64
39.7

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000041777
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864