About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28793725_28795112_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28793725 - 28795112
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TTCCTACTTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAA
U12 Branch Point Sequence:
CAAAACTCAATT
Flanking Amino Acid:
KKDDVIYRIQLMDPSQVLEG
Intron Amino Acid Position:
2165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.6
35.7
Major BPS
69.1
0.48
0.9
69.6
26.6
Major PPT
78.8
0.65
0.8
73.2
30.6
Minor 5ss
30
-2.3
2.7
36.7
40.4
Minor BPS
47.5
-0.1
1.7
60.52
42.6

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864
ENSAPLT00000047442
28718158 - 28799021
80864