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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28793725_28798880_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28793725 - 28798880
Intron Length:
5156

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTGCCTAAGAA
Flanking Amino Acid:
KKDDVIYRIQVIHRWVPCSR
Intron Amino Acid Position:
2165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
74.6
35.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
30
-2.3
2.7
36.7
40.4
Minor BPS
46.6
-0.2
2.1
60.1
45.8

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041777
28718158 - 28799021
80864