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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28795254_28798880_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28795254 - 28798880
Intron Length:
3627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TCTGCCTAAGAA
Flanking Amino Acid:
WSPQEGMEGHVIHRWVPCSR
Intron Amino Acid Position:
2212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
89.9
23.2
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
91.6
0.94
0.7
84.6
36
Minor 5ss
48.6
-0.1
2.8
71.8
38.1
Minor BPS
46.6
-0.2
2.1
60.1
45.8

Associated Gene:

Gene:
PCNX1
Ensembl Gene ID:
ENSAPLG00000016331
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047442
28718158 - 28799021
80864
ENSAPLT00000037820
28718158 - 28799021
80864
ENSAPLT00000027325
28718158 - 28799021
80864
ENSAPLT00000017058
28718158 - 28799021
80864