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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_28944099_28993836_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
28944099 - 28993836
Intron Length:
49738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TGCTCTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TATAAATTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
65.7
40.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.3
0.53
0.9
65.3
41.1
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
57
0.3
1.8
76.76
39.1

Associated Gene:

Gene:
SIPA1L1
Ensembl Gene ID:
ENSAPLG00000002917
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033683
28944022 - 29062663
118642
ENSAPLT00000002985
28899010 - 29062440
163431