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Intron Name: Anas_platyrhynchos_platyrhynchos_5_29022596_29025199_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29022596 - 29025199

Intron Length:

2604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGGTGT

5'SS Class:

strong_major

3'SS Sequence:

TTCTCCTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATAGTGATT

Flanking Amino Acid:

VPPYEDCTPRRSSSENYRMP

Intron Amino Acid Position:

1036

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

72.1

39.9

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.1

0.86

0.7

80.5

31.5

Minor 5ss

44.5

-0.6

3.2

64.5

46.9

Minor BPS

45.9

-0.2

2.2

72.16

39.1

Associated Gene:

Gene:

SIPA1L1

Ensembl Gene ID:

ENSAPLG00000002917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033683

28944022 - 29062663

118642

ENSAPLT00000002985

28899010 - 29062440

163431