Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29025479_29033666_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29025479 - 29033666

Intron Length:

8188

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACGTATC

5'SS Class:

strong_major

3'SS Sequence:

GCTCTATAAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTGAC

U12 Branch Point Sequence:

TGCTCTATAAAC

Flanking Amino Acid:

SSDGRPLESRRLSPGSDVYV

Intron Amino Acid Position:

1129

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.8

0.91

0.9

85.4

31.7

Major BPS

77.7

0.69

0.9

69.1

37.9

Major PPT

64.1

0.32

58.9

40.1

Minor 5ss

39.2

-1.2

43.2

Minor BPS

54.6

0.12

1.7

65.33

Associated Gene:

Gene:

SIPA1L1

Ensembl Gene ID:

ENSAPLG00000002917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033683

28944022 - 29062663

118642

ENSAPLT00000002985

28899010 - 29062440

163431