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Intron Name: Anas_platyrhynchos_platyrhynchos_5_29041291_29043724_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29041291 - 29043724

Intron Length:

2434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTCTTCTGTAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTGTGAT

U12 Branch Point Sequence:

CAAGTGTGATTT

Flanking Amino Acid:

VHLSPNKQGHSDSHYSSHSS

Intron Amino Acid Position:

1261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.1

24.7

Major BPS

63.5

0.34

1.4

57.1

49.4

Major PPT

82.2

0.72

0.7

77.8

Minor 5ss

44.3

-0.6

2.9

62.8

Minor BPS

36.1

-0.9

2.1

45.68

40.1

Associated Gene:

Gene:

SIPA1L1

Ensembl Gene ID:

ENSAPLG00000002917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033683

28944022 - 29062663

118642

ENSAPLT00000002985

28899010 - 29062440

163431