Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29051645_29055111_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29051645 - 29055111

Intron Length:

3467

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTTAG

5'SS Class:

strong_major

3'SS Sequence:

TATGAATGTATAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCTTCTTTATTT

Flanking Amino Acid:

PTPESQKNFKSHTLSCQSPF

Intron Amino Acid Position:

1543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.5

0.88

0.9

76.7

34.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

61.9

0.27

1.1

54.8

44.4

Minor 5ss

45.6

-0.5

2.5

57.3

47.4

Minor BPS

0.71

1.5

83.14

Associated Gene:

Gene:

SIPA1L1

Ensembl Gene ID:

ENSAPLG00000002917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033683

28944022 - 29062663

118642

ENSAPLT00000002985

28899010 - 29062440

163431