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Intron Name: Anas_platyrhynchos_platyrhynchos_5_29058534_29060873_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29058534 - 29060873

Intron Length:

2340

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATTTT

5'SS Class:

strong_major

3'SS Sequence:

CATGTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCACAT

U12 Branch Point Sequence:

TTTCTCTGCACA

Flanking Amino Acid:

NLVDAAKAFEVQRASFFAAA

Intron Amino Acid Position:

1673

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.8

90.3

22.3

Major BPS

62.5

0.31

1.2

38.9

Major PPT

80.6

0.69

0.9

36.8

Minor 5ss

45.5

-0.5

66.9

44.4

Minor BPS

54.7

0.14

1.9

73.43

38.1

Associated Gene:

Gene:

SIPA1L1

Ensembl Gene ID:

ENSAPLG00000002917

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033683

28944022 - 29062663

118642

ENSAPLT00000002985

28899010 - 29062440

163431