Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_29211880_29270593_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29211880 - 29270593

Intron Length:

58714

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAGGATCT

5'SS Class:

major

3'SS Sequence:

TTCCTTTTGACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGCAT

U12 Branch Point Sequence:

TTTTGCATAAAC

Flanking Amino Acid:

CAPQHLGQELIEDIITRMQD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.6

0.58

67.8

38.1

Major BPS

0.62

1.4

85.7

34.9

Major PPT

81.4

0.71

0.9

79.1

32.9

Minor 5ss

39.3

-1.2

3.4

53.7

44.5

Minor BPS

56.8

0.19

2.1

76.86

38.8

Associated Gene:

Gene:

RGS6

Ensembl Gene ID:

ENSAPLG00000003719

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033291

29211133 - 29366082

154950